Survival-associated meQTLs across different cancer types


We identified 23,432 meQTLs associated with patient overall survival across different cancer types at FDR < 0.05.


e.g., "BLCA"
e.g., "rs11600543"


Cancer type
SNP ID
SNP position (hg19)
Alleles (A/a)
log-rank test p-value
Sample size
Median survival time AA
Median survival time Aa
Median survival time aa
Dispaly
TGCT rs73417295 chr6:41344173 C/G 9.31E-7 132 45.1 25.77 11.53 KM Plot
TGCT rs73419209 chr6:41346584 T/A 9.31E-7 132 45.1 25.77 11.53 KM Plot
TGCT rs73577122 chr6:156973371 A/C 0.00012 134 41.97 42.27 59.27 KM Plot
TGCT rs73598052 chr10:27547760 C/T 9.52E-7 128 43.68 66.9 20.6 KM Plot
TGCT rs73631095 chr19:37972248 G/T 1.37E-13 134 45.47 37.53 17.1 KM Plot
TGCT rs73700239 chr8:103164727 A/C 0.000169 128 42.18 41.2 24.43 KM Plot
TGCT rs73742547 chr6:28339952 G/A 0 134 45.83 29.65 0.57 KM Plot
TGCT rs73742550 chr6:28342612 T/G 0 134 45.83 29.65 0.57 KM Plot
TGCT rs73742551 chr6:28342884 A/C 0 133 46.07 29.65 0.57 KM Plot
TGCT rs73742555 chr6:28347713 C/T 0 133 46.07 29.65 0.57 KM Plot
TGCT rs73783725 chr5:116551553 T/C 1.9E-13 131 46.3 28.8 17.1 KM Plot
TGCT rs74062726 chr14:70986179 A/G 1.3E-5 134 38.2 66.9 21.43 KM Plot
TGCT rs74117831 chr10:1145707 A/C 1.35E-13 134 42.03 66.9 17.1 KM Plot
TGCT rs74117848 chr10:1160974 T/G 1.35E-13 134 42.03 66.9 17.1 KM Plot
TGCT rs74117849 chr10:1165425 A/G 1.5E-13 133 42.1 66.9 17.1 KM Plot